Sorry for the delay on this Christopher, I didn’t receive the notification for your post. We’re working on implementing a new, more efficient support system soon.
About your question, are you changing your Single Site install into a MultiSite, or are you importing your Single Site data into a MultiSite?
AffiliateWP does have a tool for exporting and importing affiliates, but it doesn’t take into account the Affiliate Connections. I’ve never done this myself, but you could export your affiliates to a CSV using the Affiliate Exporter (Affiliates > Tools > Export Affiliates), then import them using the importer on the same page.
From there, you would either have to export your affiliatewp_mlm_connections table from your database, or manually connect your affiliates to each other.
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